Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs17035273 chr2:109887570 C/T 8.8E-5 478 31.23 30.08 30.73 KM Plot
PRAD rs1704186 chr2:200769539 A/C 8.32E-5 494 28.88 28.78 31.28 KM Plot
PRAD rs17052443 chr9:72891828 A/G 1.71E-5 494 22.45 31.4 30.8 KM Plot
PRAD rs17052748 chr9:72921374 A/G 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs17053503 chr9:72971212 A/T 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs17096232 chr5:154224949 A/G 0 494 30.2 34.52 4.87 KM Plot
PRAD rs17100536 chr14:63392992 A/G 1.91E-8 494 31.37 21.05 40.72 KM Plot
PRAD rs17109958 chr1:93912290 T/C 7.06E-6 484 31.33 28.13 33.37 KM Plot
PRAD rs17116417 chr5:154145474 A/G 0 494 4.87 36.05 29.97 KM Plot
PRAD rs17116433 chr5:154169739 G/A 1.12E-8 489 30.27 32.63 20.47 KM Plot
PRAD rs17116455 chr5:154197538 C/G 0 492 30.2 36.05 4.87 KM Plot
PRAD rs17116489 chr5:154217616 C/T 0 492 30.08 35.57 4.87 KM Plot
PRAD rs17116638 chr5:154330808 A/G 0 489 30.23 33.47 5.58 KM Plot
PRAD rs17116669 chr5:154365189 C/T 0 484 30.33 32.52 4.87 KM Plot
PRAD rs17199798 chr7:6721586 G/C 3.14E-7 492 31.23 27.03 50.03 KM Plot